Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDIQEIKDLMTQFDESSLREFSFKTSDGELSFSKNEGKAPLVPTMSPMSHQPEATPTIATPVSNEAGEQTKQATEVVSEIPESTVTVAEGDVVESPLVGVAYLASGPDKPNFVSVGDSVKKGQTLMIIEAMKVMNEVPAPHDGVVTEILVANEEVIEFGKGLVRIK
4HNV Chain:B ((1116-1169))
----------------------------------------------------------------------------------------------------------------VSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIE
General information:
TITO was launched using:
RESULT:
Template:
4HNV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27676 for 280 contacts (-98.8/contact) +
2D Compatibility (PS) -5501 + (NN) 3895 + (LL) 6036
1D Compatibility (HY) -4800 + (ID) 1200
Total energy: -29246.0 ( -104.45 by residue)
QMean score : 0.377
(partial model without unconserved sides chains):
PDB file :
Tito_4HNV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HNV-query.scw
PDB file :
Tito_Scwrl_4HNV.pdb
: