Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ------MADISIISMI--LVVIVAFFAGLEGIL-----DQFQIHQPLVA------CTLIGLVTGHLEAGII-LGGSLQMIALAWANIGAAVAPDAALASVAAAIILVKSGDFTQKGINFAFST----AVPLAIAGLFLTMIVRTIST-ALVHAGDKAASEGNFAAIERFHFIALLLQGLRIAFPAALLLAIPSSSVQSILEAMPDWLNGGMQVGGAMVVAVGYAMVI-NMMATREVWPFFALGFALAALNQLTLIAMGTIGVAIALI-----------YISLSKMGGSKGTSNA---GSNDPIGDILEDY |
| 4U9O Chain:A ((14-332)) | PIAGTPSQVISDGKAIKKVALLGEEYVGMRPTMHVRVGDEVKKAQILFEDKKNPGVKFTSPVSGKVVEINRGAKRVLQSVVIEVAGDDQVTFDKFEANQLASLNRDAIKTQLVESGLWTAFRTRPFSKVP-AIDSTSEAIFVTAMDTNPLAAEPTVVINEQSEAFVAGLDVLSALTTG--KVYVCKKGTSLPRSQQPNVEEHVFD---GPHPDHVAWSINYQDVIAVGQLFLTGELYTQRVVSLAGPVVNKPRLVRTV-MGASLEQLVDSEIMPGEVRIISGSVLSGTKATGPHAYLGRYHLQVSVLREG |
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General information:
TITO was launched using:
| RESULT:
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Template: 4U9O.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -263161 for 2118 contacts (-124.2/contact) +
2D Compatibility (PS) -27018 + (NN) 7217 + (LL) 756
1D Compatibility (HY) -4000 + (ID) 2400
Total energy: -288606.0 ( -136.26 by residue)
QMean score : 0.136
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