Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MITSIVFDVDDTIYDQQAPYRIAVEKCFPDFDMSAINQAYI----RFRHYSDIGFPRVMAGEWTTEYFRFWRCKETLLEFGYREIDEATGIYFQEIYEHE-LENITMLDEMRMTLDFLKSKNVPMGIITNGPTEHQLKKVKKLGLYDYVDPKRVIVSQATGFQKPEKEIFNLAAEQFDMNPSTTLYVGDSYDNDIMGAFNGGWHSMWFNHRGRSLKPGIKPVYDVAIDNFEQLFGAVKVLFDLPDNKFIFDINDKSNPVLEMGLNNGLMMAAERLLESNMSVDKVVILLRLTAKQEKVLRMKYAR |
3QNM Chain:A ((4-233)) | KYKNLFFDLDDTIWAFSRNARDTFEEVYQKYSFDRYFDSFDHYYTLYQRRNTELWLEYGEGKVTKEELNRQRFFYPLQAVGVE--DEALAERFSEDFFAIIPTKSGLMPHAKEVLEYLAP-QYNLYILSNGFRELQSRKMRSAGVDRYFK--KIILSEDLGVLKPRPEIFHFALSATQSELRESLMIGDSWEADITGAHGVGMHQAFYNVTERTV---FPFQPTYHIHSLKELMNLLE------------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3QNM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -135166 for 1818 contacts (-74.3/contact) +
2D Compatibility (PS) -24343 + (NN) -13727 + (LL) 5656
1D Compatibility (HY) -13200 + (ID) 2600
Total energy: -183380.0 ( -100.87 by residue)
QMean score : 0.372
|
|
|