Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKKNKIKKTLVDQILDKAKIEHDSLQLDALQ----GDLPNGIQKQDIFKTLALIGDKTGPIIGILPLTEHLSEKKLAKISGNKKVQMIPQKDLQK-ITGYIHGANNPIGIRQKHNYPIFIDTIALEKQELIVSAGEIGRSIRINSEVLADFVNAKFADIKE
3OP6 Chain:A ((2-152))
------MPVKKLKQFLDSHKIKYLSIAHSPAYTAQEIA----VSGKQLAKTVIIKMD-GRLAMVVLPASDHITFMKLKEAIGTSDLELATESEFEGKFAECDVGAMPPFGN--LYGLPVLVSTKLSAQDNILFNAGSHSELMQLSFGDFEKLVKPTLVTL--
General information:
TITO was launched using:
RESULT:
Template:
3OP6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67342 for 1065 contacts (-63.2/contact) +
2D Compatibility (PS) -15453 + (NN) -2697 + (LL) 528
1D Compatibility (HY) -8000 + (ID) 1200
Total energy: -94164.0 ( -88.42 by residue)
QMean score : 0.449
(partial model without unconserved sides chains):
PDB file :
Tito_3OP6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OP6-query.scw
PDB file :
Tito_Scwrl_3OP6.pdb
: