Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKLIIGIFSLIIIAILAWQGFSFLKHKEIKLQQAVVEKEIRIAEKTVEVVKRQKTERVLFLEPKGYDKSLSADILKWNQKSFEHKKFYDNQYIILRPQLADSNFANVKKLSIYQILYQKEKGSMFQKSSRLLRTYLLDQNKKPFELDELLAHNISGFKAILENIAPGTQLKEHDSNKEFLKTGRVTDGLDVKDGKLIINDLKLPLDKLYNVID-----ESYL-KSSDLDLVSNLKAKAPRVALTFDDGPNEKTTPKALEILKRYNAKATFFVMGQSAVG-HTDILQRMHAEGHEIGNHTWDHPNLTKL-----PAEKIKEEIHKTNDLIMKATGQ--KPVYLRPPYGATNATVKT-------VTGLKEMLWSVDTEDWKNH-----NTQAMMTNIKK-----QLRPGGVILMHDIHQ--TSIDALPTIMDYLITQGYYFVTVGELYSTP |
| 2W3Z Chain:A ((68-311)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------INPNALKIGSNHNNQAEGYAYSAETVRQMMNN---QKLVFLTFDDGVDPNMTPKILDVLAQQHVHATFFLVGCNITDKVKPILQRQITEGHALGIHSFSHVYSLLYPNRVGNTQQIVSEVTRTQNALKDQLGQNFKTGVWRYPGGHLSWTGLEAADKQLAAQGIQWMDWNAAVGDAEPLATRPTTVASMLAFLDGSAKIATNPNVQVVLMHDISEKTITLASLPQIIRYYKDRGYTFAVLK------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2W3Z.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -48519 for 1597 contacts (-30.4/contact) +
2D Compatibility (PS) -22040 + (NN) -10628 + (LL) 17024
1D Compatibility (HY) -8400 + (ID) 2950
Total energy: -75513.0 ( -47.28 by residue)
QMean score : 0.402
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