Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAIRKLVVMSDSHGDRDI--V-KDIKNHYLGKVDAIFHNGDSELPSSDP---IW-EGIHVVTGNCDYDS---GYPEVLVTKIDNTVIVQTHGHLHQINFTWDKLDLLAQQEDADICLYGHLHRADAWKNGKTIFINPGSVLQPRGPINEKLYAVVTITDSKVLVEYYTRQHQPYPNLTKEFSR
2KKN Chain:A ((1-157))
--VKRFLLISDSHVPVRMASLPDEILN-SLKEYDGVIGLGDYVDLDTVILLEKFSKEFYGVHGNMDYPDVKEHLPFSKVLLVEGVTIGMCHGWGAPW-DLKDRLLKVF-NEKPQVILFGHTHEPEDTVKAGVRFLNPGSLA-------EGSYAVLELDGGEVRFELKTL--------------
General information:
TITO was launched using:
RESULT:
Template:
2KKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87289 for 1108 contacts (-78.8/contact) +
2D Compatibility (PS) -16307 + (NN) -6498 + (LL) 944
1D Compatibility (HY) -7600 + (ID) 1950
Total energy: -118700.0 ( -107.13 by residue)
QMean score : 0.383
(partial model without unconserved sides chains):
PDB file :
Tito_2KKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KKN-query.scw
PDB file :
Tito_Scwrl_2KKN.pdb
: