Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEENMNIKQLKSKTMLGTVALVSAFSFASTNADANTYNYAVDVDYLASAEEIAQAHPASNTFPLGQCTWGVKEMATWAGNWWGNGGDWAASAASAGYTVGTQPRVGSIVCWTD-------------GSYGHVAYVTAVDPVTNKIQVLESNYAGHQWIDNYRGWFDPQNTATPGVVSYIYPN
2IF6 Chain:A ((4-50))
-----------------------------------------------------------------------------------------------------QPQTGDIIFQISRSSQSKAIQLATHSDYSHTGMLVMRN---KKPYVFEAVGPVKYTPLKQWIAHGEKGKYVVRRVEGGLSV
General information:
TITO was launched using:
RESULT:
Template:
2IF6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16934 for 162 contacts (-104.5/contact) +
2D Compatibility (PS) -4087 + (NN) -3365 + (LL) 6220
1D Compatibility (HY) -1200 + (ID) 450
Total energy: -19816.0 ( -122.32 by residue)
QMean score : 0.194
(partial model without unconserved sides chains):
PDB file :
Tito_2IF6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2IF6-query.scw
PDB file :
Tito_Scwrl_2IF6.pdb
: