Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKIALFAGGDLTYFEYDFD----YFVGIDRGSLFLLKNGLSLDM-AVGDFDSITEDELLYIKHYCSNIVSASAEKNDTDTELALKTIFKEFPEAQVTVFGAFGGRIDHMMSN-IFLPSDTDLEPFMSQIRLKDEQNIVTYLPSGKNQVSRIEGMSYVSFMPE-S-ESTLQISGAKYELNKSNYFKKKMYSSNEFMTSPIEVELKDGYLIIIYSKDRG
3CQ9 Chain:A ((3-213))
-TIVNLLVGGPTANYPADLTTIPGPWVGADRGALRLVKRGIQ-PVMVVGDFTVKDALVGAIVV---------KPDQDHTDTQLAIKSIFEQLQPDEVHLYGATGGRLDHLLANMWLVL-DPVFRQWAPQIKLIDKQNSVRFFLPGDYQITKEADKRYLAFVPLMPMH--LTLPDEKYQLDAAYNAYPISWASNEFSGNTGHFSFDAGVLAVIQSRD--
General information:
TITO was launched using:
RESULT:
Template:
3CQ9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92029 for 1495 contacts (-61.6/contact) +
2D Compatibility (PS) -21010 + (NN) -8611 + (LL) 904
1D Compatibility (HY) -13200 + (ID) 3050
Total energy: -136996.0 ( -91.64 by residue)
QMean score : 0.434
(partial model without unconserved sides chains):
PDB file :
Tito_3CQ9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CQ9-query.scw
PDB file :
Tito_Scwrl_3CQ9.pdb
: