Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQGPRERMVVSAALLIRERGAHATAISDVLQHSGAPRGSAYHYFPGGRTQLLCEAVDYAGEHVAAMINEAEG----GL-ELLDALIDKYRQQLLSTDFRAGCPIAAVSVEAGDEQDRERMAPVIARAA----AVFDRWSDLTAQRFIADGIPPDRAHELAVLATSTLEGAILLARVRRDLTPLDLVHRQLRNLLLAELPERSR
3RD3 Chain:A ((7-189))
--DTRQHLLDTGYRIMAVKGFSGVGLNEILQSAGVPKGSFYHYFK-SKEQFGQALLEDYFRVYLADMDQRFSAPGLNARERLMSYWQKWLDNACPPCDEQRCLVVKLSAEVAD-----LSESMRITLRDGSDGIIERLVGCLGQGRDDGSLAPCDARHMASALYQLWLGASLLSKLHRSPGPLETAMQTTR------------
General information:
TITO was launched using:
RESULT:
Template:
3RD3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73304 for 1221 contacts (-60.0/contact) +
2D Compatibility (PS) -19313 + (NN) -15050 + (LL) 1516
1D Compatibility (HY) -4800 + (ID) 1700
Total energy: -112651.0 ( -92.26 by residue)
QMean score : 0.408
(partial model without unconserved sides chains):
PDB file :
Tito_3RD3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RD3-query.scw
PDB file :
Tito_Scwrl_3RD3.pdb
: