Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSSRPYLVRALYEWIVDNDCTPHILVNAEFAGVKVPPGYASDGQIVLNVSPSAVRHLHMDNEAVSFEGRFGGVAQSLYIPALAVMAIYARENGQGMVFDLEQPGPVDDEPGDDDGGPSDEPPRPSGRPSLKVVK
1TWB Chain:B ((8-107))
---KRPYLLRAYYDWLVDNSFTPYLVVDATYLGVNVPVECVKDGQIVLNLSASATGNLQLTNDFIQFNARFKGVSRELYIPMGAALAIYARENGDGVMFEPEE--------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1TWB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95896 for 680 contacts (-141.0/contact) +
2D Compatibility (PS) -10758 + (NN) -2735 + (LL) -1132
1D Compatibility (HY) -12400 + (ID) 2600
Total energy: -125521.0 ( -184.59 by residue)
QMean score : 0.552
(partial model without unconserved sides chains):
PDB file :
Tito_1TWB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TWB-query.scw
PDB file :
Tito_Scwrl_1TWB.pdb
: