Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
NLYQFKNMIKCTVPSRSWWDFADYGCYCGRGGSGTPVDDLDRCCQVHDNCYNEAEKISGCWPYFKTYSYECSQGTLTCKGDNNACAASVCDCDRLAAICFAGAPYNDNNYNIDLKARCQ
1OWS Chain:A ((1-117))
NTYQFRNMIECTVPSRSWWDFADYGCYCG-CGSGTPTDDLDRCCQVHCNCYRQAGEISGCRPKFKTYTYQCSGGTLTCKGNNNACAASSCDCDRLAAICFAGAPYNDNNYNIDLKARC-
General information:
TITO was launched using:
RESULT:
Template:
1OWS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68770 for 882 contacts (-78.0/contact) +
2D Compatibility (PS) -12605 + (NN) -6548 + (LL) 220
1D Compatibility (HY) -13600 + (ID) 5000
Total energy: -106303.0 ( -120.52 by residue)
QMean score : 0.501
(partial model without unconserved sides chains):
PDB file :
Tito_1OWS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OWS-query.scw
PDB file :
Tito_Scwrl_1OWS.pdb
: