Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKP
3QBV Chain:C ((1-136))
MQTIKCVVVGDGAVGKTCLLISYTTNKFP-EYVPTVFDNYAVTVMIGGEPYTLGLRDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKP
General information:
TITO was launched using:
RESULT:
Template:
3QBV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65383 for 945 contacts (-69.2/contact) +
2D Compatibility (PS) -14629 + (NN) -7538 + (LL) -28
1D Compatibility (HY) -20000 + (ID) 6700
Total energy: -114278.0 ( -120.93 by residue)
QMean score : 0.480
(partial model without unconserved sides chains):
PDB file :
Tito_3QBV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QBV-query.scw
PDB file :
Tito_Scwrl_3QBV.pdb
: