Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKPNVAIIVAALKPALGIGYKGKMPWRLRKEIRYFKDVTTRTTKPNTRNAVIMGRKTWESIPQKFRPLPDRLNIILSRSYENKIIDDNIIHASSIESSLNLVSDVERVFIIGGAEIYNELINNSLVSHLLITEIEHPSPESIEMDTFLKFPLESWTKQPKSELQKFVGDTVLEDDIKEGDFTYNYTLWTRK
4H96 Chain:B ((1-189))
---PNVAIIVAALKPALGIGYKGKMPWRLRKEIRYFKDVTTRTTKPNTRNAVIMGRKTWESIPQKFRPLPDRLNIILSRSYENEIIDDNIIHASSIESSLNLVSDVERVFIIGGAEIYNELINNSLVSHLLITEIEHPSPESIEMDTFLKFPLESWTKQPKSELQKFVGDTVLEDDIKEGDFTYNYTLWTRK
General information:
TITO was launched using:
RESULT:
Template:
4H96.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -150084 for 1368 contacts (-109.7/contact) +
2D Compatibility (PS) -20535 + (NN) -6575 + (LL) 244
1D Compatibility (HY) -27200 + (ID) 9400
Total energy: -213550.0 ( -156.10 by residue)
QMean score : 0.749
(partial model without unconserved sides chains):
PDB file :
Tito_4H96.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4H96-query.scw
PDB file :
Tito_Scwrl_4H96.pdb
: