Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VRSLNSIVAVCQNMGIGKDGNLPWPPLRNEYKYFQRMTSTSHVEGKQNAVIMGKKTWFSIPEKNRPLKDRINIVLSRELKEAPKGAHYLSKSLDDALALLDSPELKSKVDMVWIVGGTAVYKAAMEKPINHRLFVTRILHEFESDTFFPEIDYKDFKLLTEYPGVPADIQEEDGIQYKFEVYQKSVLAQ
2W3M Chain:B ((2-186))
VGSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKFEVYEKN----
General information:
TITO was launched using:
RESULT:
Template:
2W3M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123291 for 1355 contacts (-91.0/contact) +
2D Compatibility (PS) -20146 + (NN) -10682 + (LL) 632
1D Compatibility (HY) -24000 + (ID) 6950
Total energy: -184437.0 ( -136.12 by residue)
QMean score : 0.830
(partial model without unconserved sides chains):
PDB file :
Tito_2W3M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2W3M-query.scw
PDB file :
Tito_Scwrl_2W3M.pdb
: