Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVGSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKFEVYEKND
4KFJ Chain:B ((1-186))
-VGSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKFEVYEKND
General information:
TITO was launched using:
RESULT:
Template:
4KFJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113206 for 1401 contacts (-80.8/contact) +
2D Compatibility (PS) -20187 + (NN) -11157 + (LL) 208
1D Compatibility (HY) -26800 + (ID) 9300
Total energy: -180442.0 ( -128.80 by residue)
QMean score : 0.790
(partial model without unconserved sides chains):
PDB file :
Tito_4KFJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4KFJ-query.scw
PDB file :
Tito_Scwrl_4KFJ.pdb
: