Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNQQKSLTLIVALTTSYGIGRSNSLPWKLKKEISYFKRVTSFVPTFDSFESMNVVLMGRKTWESIPLQFRPLKGRINVVITRNESLDLGNGIHSAKSLDHALELLYRTYGSESSVQINRIFVIGGAQLYKAAMDHPKLDRIMATIIYKDIHCDVFFPLKFRDKEWSSVWKKEKHSDLESWVGTKVPHGKINEDGFDYEFEMWTRDL
1LY4 Chain:A ((2-206))
-NQQKSLTLIVALTTSYGIGRSNSLPWKLKKEISYFKRVTSFVPTFDSFESMNVVLMGRKTWESIPLQFRPLKGRINVVITRNESLDLGNGIHSAKSLDHALELLYRTYGSESSVQINRIFVIGGAQLYKAAMDHPKLDRIMATIIYKDIHCDVFFPLKFRDKEWSSVWKKEKHSDLESWVGTKVPHGKINEDGFDYEFEMWTRDL
General information:
TITO was launched using:
RESULT:
Template:
1LY4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -146753 for 1569 contacts (-93.5/contact) +
2D Compatibility (PS) -22312 + (NN) -10669 + (LL) 208
1D Compatibility (HY) -30800 + (ID) 10250
Total energy: -220576.0 ( -140.58 by residue)
QMean score : 0.742
(partial model without unconserved sides chains):
PDB file :
Tito_1LY4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LY4-query.scw
PDB file :
Tito_Scwrl_1LY4.pdb
: