Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE
3TDB Chain:A ((1-158))
-----KLPPGWEKAMSRSSGRVYYFNHITNASQWERPS------------EPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE
General information:
TITO was launched using:
RESULT:
Template:
3TDB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29833 for 1108 contacts (-26.9/contact) +
2D Compatibility (PS) -15498 + (NN) -8271 + (LL) -436
1D Compatibility (HY) -15600 + (ID) 7250
Total energy: -76888.0 ( -69.39 by residue)
QMean score : 0.528
(partial model without unconserved sides chains):
PDB file :
Tito_3TDB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TDB-query.scw
PDB file :
Tito_Scwrl_3TDB.pdb
: