Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AFYKREMFDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSVAEGYYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVSQRRVDFCKDPSAIGKKQVPCFASMLTKKLHFFPKSN
4N7J Chain:B ((10-271))
------MFDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQAARGNQ-------------------TNITEVDAASVYTLPAGADFLMCYSVAEGYYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVSQRRVDFCKDPSAIGKKQVPCFASMLTKKLHFFPK--
General information:
TITO was launched using:
RESULT:
Template:
4N7J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -176304 for 2024 contacts (-87.1/contact) +
2D Compatibility (PS) -25642 + (NN) -5478 + (LL) 1572
1D Compatibility (HY) -36000 + (ID) 12100
Total energy: -253952.0 ( -125.47 by residue)
QMean score : 0.401
(partial model without unconserved sides chains):
PDB file :
Tito_4N7J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4N7J-query.scw
PDB file :
Tito_Scwrl_4N7J.pdb
: