Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCSLRLFVYDCAADRAMTARRRGVVINPVLET-SEIPETMPDPDTDDEGCLSVPGESFPTGRAKWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWGVPGLSWLPGEDPDPFGH
1N5N Chain:A ((13-175))
MAILNILEFPDPRLRTIAKPVEV-----VDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSEDKS----EPRVFINPEFEPLTE------EMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQ--------------------
General information:
TITO was launched using:
RESULT:
Template:
1N5N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81118 for 1280 contacts (-63.4/contact) +
2D Compatibility (PS) -17335 + (NN) -2995 + (LL) 340
1D Compatibility (HY) -13600 + (ID) 3050
Total energy: -117758.0 ( -92.00 by residue)
QMean score : 0.412
(partial model without unconserved sides chains):
PDB file :
Tito_1N5N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N5N-query.scw
PDB file :
Tito_Scwrl_1N5N.pdb
: