Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSAIERITKAAHLIDMNDIIREGNPTLRTVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIVEEGETPQEAYDLEAIMYNPKIVSHSVQDAALGEGEGCLSVDRNVPGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRINEKDPFAVKDGLLILE
1RL4 Chain:A ((10-163))
-----------------KIVKYPDPILRRRSEEVTN-FDDNLKRVVRKMFDIMYES------------KGIGLSAPQVNISKRIIVWN------------------RIFINPSIVEQSLVKL--KLIEGCLSF-PGIEGKVERPSIVSISYYDINGYKHLKILKGIHSRIFQHEFDHLNGTLFIDKMTQVDKKK---------
General information:
TITO was launched using:
RESULT:
Template:
1RL4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52452 for 1078 contacts (-48.7/contact) +
2D Compatibility (PS) -14932 + (NN) -4320 + (LL) 4776
1D Compatibility (HY) -12400 + (ID) 2900
Total energy: -82228.0 ( -76.28 by residue)
QMean score : 0.311
(partial model without unconserved sides chains):
PDB file :
Tito_1RL4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RL4-query.scw
PDB file :
Tito_Scwrl_1RL4.pdb
: