Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MATPRGLGALLLLLLLPTSGQEKPTEGPRNTCLGSNNMYDIFNLNDKALCFTKCRQSGSDSCNVENLQRYWLNYEAHLMKEGLTQKVNTPFLKALVQNLSTNTAEDFYFSLEP---SQVPRQVMKDEDKPPDRVRLPKSLFRSLPGNRSVVRLAVTILDIGPGTLFKGPRLGLGDGSGVLNNRLVGLSVGQMHVTKLAEPLEIVFSHQRPPPNMTLTCVFWDVTKGTTGDWSSEGCSTEVRPEGTVCCCDHLTFFALLLRPTLDQSTVHILTRISQAGCGVSMIFLAFTIILYAFLRLSRERFKSEDAPKIHVALGGSLFLLNLAFLVNVGSGSKGSDAACWARGAVFHYFLLCAFTWMGLEAFHLYLLAVRVFNTYFGHYFLKLSLVGWGLPALMVIGTGSANSYGLYTIRDRENRTSLELCWFREGTTMYALYITVHGYFLITFLFGMVVLALVVWKIFTLSRATAVKERGKNRKKVLTLLGLSSLVGVTWGLAIFTPLGLSTVYIFALF-----NSLQGVFICCWFTILYLPSQSTTVSSSTARLDQAHSASQE |
3UO9 Chain:A ((67-489)) | ----PSLEDLLFYTIAEGQEKIP-----------------------VHKFITALKSTGLRT-SDPRLKECMDMLRLTLQTTSDGVMLDKDLFKKCVQSNIVLLTQAFRRKFVIPDFMSFTSHIDELYESAKKQSGGKVADYIPQLAKFSPDLWGVSVCTV------DGQRHSTGDTKV------------PFCLQSCVKPLKYAIAVNDLGTEYVHRYV---GKEPSGLRFNKLFLNEDDKPHNPMVNAGAIVVTSLIKQGVNNAEKFDYVMQFLNKMAG------------NEYVGFSNATFQSERES-------GDRNFAIGYYLKEKKCFPEGTD-------------------------------MVGILDFYFQLCSIEVTCESASVMAATLANGGFCPITG-----------------------------------------ERVLSPEAVRNTLSLMHSCGMY---DFSGQFAFHVGLPAKSGVAGGILLVVP-NVMGMMCWSPPLDKMGNSVKGIHFCHDLVSLCNFHNYDNLRHFAKKLDPRREGE-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3UO9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -195389 for 3541 contacts (-55.2/contact) +
2D Compatibility (PS) -42470 + (NN) -16451 + (LL) 11424
1D Compatibility (HY) -13600 + (ID) 2650
Total energy: -259136.0 ( -73.18 by residue)
QMean score : 0.218
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