Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------AVTCGDVTSA---VAPCMSYAS------------GKASAPSGACCSGVRTLNAKASTPADRKAACNCLKNLAGSGIS-------MGNAASIPGKCGVSVSIPISTKTNCNNLH
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNL--------DEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLM-------SQPCQM--
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35408 for 483 contacts (-73.3/contact) +
2D Compatibility (PS) -7293 + (NN) 622 + (LL) 976
1D Compatibility (HY) -5200 + (ID) 700
Total energy: -47003.0 ( -97.31 by residue)
QMean score : 0.303
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: