Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VVQCGQVTQLMAPCMPYLSGA---PG--MT---------------PYGICCNSLGVLNQLAASTADRVAACNCVKAAASGGF-----PA----VDFSRAAALPAACGLAINFAVTPNMDCNQVTDEP
1PSY Chain:A ((25-116))
--------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV-------------------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43075 for 421 contacts (-102.3/contact) +
2D Compatibility (PS) -5924 + (NN) 1166 + (LL) 2352
1D Compatibility (HY) -2400 + (ID) 650
Total energy: -48531.0 ( -115.28 by residue)
QMean score : 0.233
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: