Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VVQCGQVTQLMAPCMPYLSGA---P--GMTP-----------YGICCNSLGVLNQLAASTADRVAACNCVKAAASGFP----AVD-----FSRAAALPAACGLAINFAVTPNMDCNQVTDEP
1W2Q Chain:A ((23-114))
--------VNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEME------NTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAP----------------
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41821 for 399 contacts (-104.8/contact) +
2D Compatibility (PS) -6775 + (NN) -313 + (LL) 2020
1D Compatibility (HY) -400 + (ID) 450
Total energy: -47739.0 ( -119.65 by residue)
QMean score : 0.222
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: