Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGKCGKTPAEKVALKLAPCAKAAQ----------DPG--------ARPPAACCAAVRDIGTHQSHACLCAVLLSSTVRRSGVK--PEVAITIP--KRCKLANRPVGY-----KCGAYTLPSL--QG--------------------------------------
1KOH Chain:A ((201-362))
LNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPE-LLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAF
General information:
TITO was launched using:
RESULT:
Template:
1KOH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23904 for 556 contacts (-43.0/contact) +
2D Compatibility (PS) -9765 + (NN) -1890 + (LL) 248
1D Compatibility (HY) -4800 + (ID) 950
Total energy: -41061.0 ( -73.85 by residue)
QMean score : 0.414
(partial model without unconserved sides chains):
PDB file :
Tito_1KOH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KOH-query.scw
PDB file :
Tito_Scwrl_1KOH.pdb
: