Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QDNNPLEHCRDVFV--SFMPCMGFVEGIFQ----------QP-----------SPDCCRGVTHLNNVVKFTSPGSRNRQDSGETERVCLCIEIMGNANH----L-P----FLPAAINNLPLRCSLTLSFPISVDMDCSQFRNTKNPDVEKLN
1PSY Chain:A ((16-116))
------QQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV------------------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV---------------------------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51170 for 486 contacts (-105.3/contact) +
2D Compatibility (PS) -6778 + (NN) -130 + (LL) 1180
1D Compatibility (HY) -2800 + (ID) 600
Total energy: -60298.0 ( -124.07 by residue)
QMean score : 0.262
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: