Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VTCGQVVGAVAPCLGYLRNGGTPPQPCCTGVRGLRNAARTTSDRKTICNCLKSASSSY----RGVS-----GNYAASLPGKCGVNLPYKISPSTDCNRIQ
3OB4 Chain:A ((427-485))
----------------------HQERCCNELNEFEN------NQRCMCEALQQIMENQSDRLQGRQQEQQFKRELRNLPQQCGLRAP-------------
General information:
TITO was launched using:
RESULT:
Template:
3OB4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11766 for 265 contacts (-44.4/contact) +
2D Compatibility (PS) -5022 + (NN) 1209 + (LL) 1860
1D Compatibility (HY) -2000 + (ID) 550
Total energy: -16269.0 ( -61.39 by residue)
QMean score : 0.278
(partial model without unconserved sides chains):
PDB file :
Tito_3OB4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OB4-query.scw
PDB file :
Tito_Scwrl_3OB4.pdb
: