Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QQIQDFIDCLNVIIYFSSCIGYIDGH----VR-----------EPTWGCCMGVHELNRLVKQDRDAQKICQCIELIAAVDD-----PPF----VLANIDALPSKCQTHLSFPISVKKNCSEVQ
1SM7 Chain:A ((14-100))
--------------HLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQE--------DQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQ--------------
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61555 for 417 contacts (-147.6/contact) +
2D Compatibility (PS) -6264 + (NN) -194 + (LL) 2920
1D Compatibility (HY) -1200 + (ID) 600
Total energy: -66893.0 ( -160.41 by residue)
QMean score : 0.180
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: