Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AIGCGTVVSYLNPCLPYVTNK----G---P--------------L--GSCCGGVKGLYGAAQTAQDRQSVCSCLKSLAGSYK------DV----DLNKAAGLPGQCGVNIPYKISPSTDCSKVN
1PSY Chain:A ((25-121))
--------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV--RCMRQ---------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24610 for 467 contacts (-52.7/contact) +
2D Compatibility (PS) -6180 + (NN) -195 + (LL) 1276
1D Compatibility (HY) -2400 + (ID) 700
Total energy: -32809.0 ( -70.25 by residue)
QMean score : 0.148
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: