Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVCDMSNEQFMSCQPAAAKTTDPPAAPSQACCDALAG-ADLK---CLCG-YKNSPWMGVYNIDPKRAMELPAKCGLATPP--DC---
1HYP Chain:? ((6-80))
PSCP----DLSICLNILGGS----LGTVDDCCALIGGLGDIEAIVCLCIQLRALGILNL----NRNLQLILNSCGRSYPSNATCPRT
General information:
TITO was launched using:
RESULT:
Template:
1HYP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22054 for 371 contacts (-59.4/contact) +
2D Compatibility (PS) -6855 + (NN) -5535 + (LL) 40
1D Compatibility (HY) -5200 + (ID) 650
Total energy: -40254.0 ( -108.50 by residue)
QMean score : 0.424
(partial model without unconserved sides chains):
PDB file :
Tito_1HYP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HYP-query.scw
PDB file :
Tito_Scwrl_1HYP.pdb
: