Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AISCGTVVSKLAPCLGFLRGG---GS-------------------PPPACCSGIRNLQSMARSTPDRQAACGCLKSAS------AGV-------NMRNAAALPGKCGVNIGYPISRSVDCSRVK
1PSY Chain:A ((25-122))
--------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV--RCMRQT--------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24633 for 461 contacts (-53.4/contact) +
2D Compatibility (PS) -6576 + (NN) -3693 + (LL) 1664
1D Compatibility (HY) -4400 + (ID) 650
Total energy: -38288.0 ( -83.05 by residue)
QMean score : 0.403
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: