Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---AATCDPMALSPCATAMFSPSKPKP-----SADCCNKLKLQAKCMCKYATD-PKFK-GYIQSPDAKRVADSCHV-PFPKC----------------------------
1ERV Chain:? ((1-105))
MVKQIE-SKTAF----QEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKSMPTFQFFKKGQKVGEFSGANKEKLEATINELV
General information:
TITO was launched using:
RESULT:
Template:
1ERV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9753 for 363 contacts (-26.9/contact) +
2D Compatibility (PS) -7207 + (NN) -4972 + (LL) 88
1D Compatibility (HY) -4800 + (ID) 600
Total energy: -27244.0 ( -75.05 by residue)
QMean score : 0.300
(partial model without unconserved sides chains):
PDB file :
Tito_1ERV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ERV-query.scw
PDB file :
Tito_Scwrl_1ERV.pdb
: