Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----VTCNPAQLSPCLPAISSSSPP-----STTCCSKLKEQKPCLCGYLKD-PALK-QFVSSPGARKVASACGV-PYPSC----------------------------
1ERV Chain:? ((1-105))
MVKQIE-SKTAFQEALDA--AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKSMPTFQFFKKGQKVGEFSGANKEKLEATINELV
General information:
TITO was launched using:
RESULT:
Template:
1ERV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11791 for 355 contacts (-33.2/contact) +
2D Compatibility (PS) -7023 + (NN) -1098 + (LL) 232
1D Compatibility (HY) -4800 + (ID) 750
Total energy: -25230.0 ( -71.07 by residue)
QMean score : 0.286
(partial model without unconserved sides chains):
PDB file :
Tito_1ERV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ERV-query.scw
PDB file :
Tito_Scwrl_1ERV.pdb
: