Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---VTCSPAQLSSCVSAITSSTPPTNLCCSKIKEQKPCLCQYLKNPKLQKFINTPNARKVASTCGTPFPKC
1TC3 Chain:C ((1-51))
PRGSALSDTERAQ-LDVMKLLNVSLHEMSRKISRSRHCIRVYLKDPV--SYGTS-----------------
General information:
TITO was launched using:
RESULT:
Template:
1TC3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19245 for 287 contacts (-67.1/contact) +
2D Compatibility (PS) -4771 + (NN) -1520 + (LL) 708
1D Compatibility (HY) -1600 + (ID) 400
Total energy: -26828.0 ( -93.48 by residue)
QMean score : 0.454
(partial model without unconserved sides chains):
PDB file :
Tito_1TC3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TC3-query.scw
PDB file :
Tito_Scwrl_1TC3.pdb
: