Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------------QQCLDNLSN--MQVCAPLV---------------LPGAVNPAPN----SNCCIALQATNKDCICNALRAATT----------------------FTTSCNLPSLDC----
1PSY Chain:A ((1-125))
AEFMESKGEREGSSSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQVRDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVRCMRQTRTN
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34809 for 439 contacts (-79.3/contact) +
2D Compatibility (PS) -6544 + (NN) -4609 + (LL) 0
1D Compatibility (HY) -4400 + (ID) 700
Total energy: -51062.0 ( -116.31 by residue)
QMean score : 0.408
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: