Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----------------------------AGECGRVPVDQVALKLAPCAA-----ATQNPRAAVPPSCCAQVRAIGRVPKCLCAVMLSDTARKAGVKPA-----VAMTIPKRCAIANRPVGYKCGPYTLP----------
1ML8 Chain:A ((1-134))
MQARVKWVEGLTFLGESASGHQILMDGNSGDKAPSPMEMVLMAAGGCSAIDVVSILQKGRQDVVD--CEVKLTSERRERLFTHINLHFIVTGRDLKDAAVARAVDLSAEKYC-----SVALMLEK-AVNITHSYEVVAA
General information:
TITO was launched using:
RESULT:
Template:
1ML8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36779 for 483 contacts (-76.1/contact) +
2D Compatibility (PS) -8566 + (NN) -1937 + (LL) 632
1D Compatibility (HY) -3600 + (ID) 850
Total energy: -51100.0 ( -105.80 by residue)
QMean score : 0.131
(partial model without unconserved sides chains):
PDB file :
Tito_1ML8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ML8-query.scw
PDB file :
Tito_Scwrl_1ML8.pdb
: