Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VDAMTCQQAITTLMPCQPFLTGAAPAPTVPCCLAVSNVNTAATTTQARRDLCECFEKAAPGF-----GVK-----PEKAKQLPQLCGVTVPVPIDPTINCKDIQ
3OB4 Chain:A ((429-486))
----------------------------ERCCNELNEFEN------NQRCMCEALQQIMENQSDRLQGRQQEQQFKRELRNLPQQCGLRAPQ------------
General information:
TITO was launched using:
RESULT:
Template:
3OB4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19988 for 255 contacts (-78.4/contact) +
2D Compatibility (PS) -4870 + (NN) -385 + (LL) 2896
1D Compatibility (HY) -800 + (ID) 600
Total energy: -23747.0 ( -93.13 by residue)
QMean score : 0.252
(partial model without unconserved sides chains):
PDB file :
Tito_3OB4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OB4-query.scw
PDB file :
Tito_Scwrl_3OB4.pdb
: