Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
YGPCGKHDIEKEA--EKLAPCTKAAQYLEAP-----------------VSKRCCTVMEKKLKNPDCLCAIMFSHTA---RS-AG--V---NPEVAVTIPKRCNIPVRPVGHKCGAFPLV
1W2Q Chain:A ((16-112))
--------CERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEMENTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFR--------------
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30621 for 435 contacts (-70.4/contact) +
2D Compatibility (PS) -7236 + (NN) -3764 + (LL) 364
1D Compatibility (HY) -2800 + (ID) 600
Total energy: -44657.0 ( -102.66 by residue)
QMean score : 0.243
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: