Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----DWAEDKKECSNQLVALSTCIPFVG---GNTKVPD---STCCTNLRKKINQTKKCLCLLVA-------DRNDPDLGFKVNATLAL--ILPSICHAPSNASECPAEANKSSQ-----------
1HSS Chain:A ((5-124))
MCYPGQAFQVPA-------LPACRPLLRLQCNGSQVPEAVLRDCCQQLAHI---SEWCRCGALYSMLDSMYKEHGAFPRCRREVVKLTAASITAVCRLPIV----VDASGDGAYVCKDVAAYPDA
General information:
TITO was launched using:
RESULT:
Template:
1HSS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15337 for 456 contacts (-33.6/contact) +
2D Compatibility (PS) -8183 + (NN) -4368 + (LL) 1100
1D Compatibility (HY) -2000 + (ID) 650
Total energy: -29438.0 ( -64.56 by residue)
QMean score : 0.356
(partial model without unconserved sides chains):
PDB file :
Tito_1HSS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HSS-query.scw
PDB file :
Tito_Scwrl_1HSS.pdb
: