Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--QSCPQTITFSPCLTNVGNT-------GTP-----------PAYDSQC----CKLVRDPKWTDQCL-CAVVSSHFPGVDE-TKALNLAHDCGRRVPKGIYCDGRPVPP--------------------
1NHP Chain:? ((322-447))
GVQGSSGLAVFDYKFASTGINEVMAQKLGKETKAVTVVEDYLMDFNPDKQKAWFKLVYDPE-TTQILGAQLMSKA--DLTANINAISLAIQAKMTIEDLAYADFFFQPAFDKPWNIINTAALEAVKQER
General information:
TITO was launched using:
RESULT:
Template:
1NHP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12552 for 453 contacts (-27.7/contact) +
2D Compatibility (PS) -8765 + (NN) -3939 + (LL) 148
1D Compatibility (HY) -2000 + (ID) 950
Total energy: -28058.0 ( -61.94 by residue)
QMean score : 0.287
(partial model without unconserved sides chains):
PDB file :
Tito_1NHP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NHP-query.scw
PDB file :
Tito_Scwrl_1NHP.pdb
: