Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
APSCPAVAQTLTPCLPHVSNP----GPS-----PPQPCCNRVKTLNSQAKTTQDRHHVCGCLKSLMAGI---------------PG--LN----LPAFASVAKDCGVDIGYIISPNTDCSK
1B1U Chain:A ((15-109))
--------NPLDSCRWYVSTRTCGVGPRLATQEMKARCCRQLEAI--------PAYCRCEAVRILMDGVVTPSGQHEGRLLQDLPGCPRQVQRAFAPKLVTEVECNLATIH----------
General information:
TITO was launched using:
RESULT:
Template:
1B1U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43995 for 410 contacts (-107.3/contact) +
2D Compatibility (PS) -6195 + (NN) 3063 + (LL) 1044
1D Compatibility (HY) -2800 + (ID) 750
Total energy: -49633.0 ( -121.06 by residue)
QMean score : 0.327
(partial model without unconserved sides chains):
PDB file :
Tito_1B1U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1B1U-query.scw
PDB file :
Tito_Scwrl_1B1U.pdb
: