Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
KKDLPFCNVELLPCVL-------PFKVRGHGSKL---P----NGCCEKMKKSTSCMCRFLMAKERDLNAAAHRIFWFCKISVPNCPKI----------------------
1IM3 Chain:D ((1-95))
----PWFQIEDNRCYIDNGKLFARGSIVGNMSRFVFDPKADYGGVGENL---------YVHADDVEFVPGESLKWNVRNLDVM--PIFETLALRLVLQGDVIWLRCVPEL
General information:
TITO was launched using:
RESULT:
Template:
1IM3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27350 for 291 contacts (-94.0/contact) +
2D Compatibility (PS) -6507 + (NN) 154 + (LL) 748
1D Compatibility (HY) -4000 + (ID) 550
Total energy: -37505.0 ( -128.88 by residue)
QMean score : 0.153
(partial model without unconserved sides chains):
PDB file :
Tito_1IM3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IM3-query.scw
PDB file :
Tito_Scwrl_1IM3.pdb
: