Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DYTRLMIQVHSYVPFCAYTY--DYFSYCLDFLTGY----Y------YKP-----------GKKCCVHIVKLNIIAKHKKENPRLLCNCVEMMTRGYT-----PP----MLADKIQQLPLLCNTHLSFPISSSMDCSTV
1PSY Chain:A ((16-121))
-------------QQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV-------R-D-ECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV--RCMRQ--------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63504 for 549 contacts (-115.7/contact) +
2D Compatibility (PS) -7667 + (NN) -3233 + (LL) 2544
1D Compatibility (HY) -400 + (ID) 500
Total energy: -72760.0 ( -132.53 by residue)
QMean score : 0.220
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: