Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQDSNASCNTGPFYKGVIKFLNQFQSRVNSEQSREDYVKESIIISLEDAISPFYSLVDK-GVCYTIP------NSERITLLD------ICVNQLVDNHRKI-VHGVILLLSRLRRNRKSMLFNDKYFC-----
2WB6 Chain:A ((11-124))
-------LESTSLYKKAGSENLYFQGIVD---------KNKIVIPMSEFLDSMFLVIEKLGVHAEKKGSMIFLSSERVKLADWKQLGAMCSDCY---HCKLPLSSFIEIVTRKAKDKFLVMYNEKEVTLVARG
General information:
TITO was launched using:
RESULT:
Template:
2WB6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50382 for 605 contacts (-83.3/contact) +
2D Compatibility (PS) -10098 + (NN) 2564 + (LL) 876
1D Compatibility (HY) -6800 + (ID) 1150
Total energy: -64990.0 ( -107.42 by residue)
QMean score : 0.339
(partial model without unconserved sides chains):
PDB file :
Tito_2WB6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2WB6-query.scw
PDB file :
Tito_Scwrl_2WB6.pdb
: