Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSKSDILCKRVIGIVGSGQLGKMTAIAATKLGQETHIFANAKDDPACSVANNLTIADFSDKKALESFAQSVSLVTIESENIPCDAIDIMS-QYVDFYPGKRALHISQNRLREKDFIRNLGIRTADYKSIQDHNDLLEVTRAFGYPTRLKTTEMGYDGKGQYMIGNDSQVERFASFDWNAQYILEASVDLL-KEVSIVVTRDKNGKVAFFPVAENHHVDGILDTSIVPAKVDSKLVQEIQQTAEKIADALDVVGILAIEFFITKNSELLVNELAPRPHNSCHWSLDACNVSQFEQLIRVICKLPMQEVVLRFPCMTKNIIGNDVYNT-----YK---Y-LSDKRANLTIYGKKEVRGRRKMGHVNIDLS |
3AX6 Chain:A ((1-352)) | --------MKKIGIIGGGQLGKMMTLEAKKMGFYVIVLDPTPRSPAGQVADEQIVAGFFDSERIEDLVKGSDVTTYDLEHIDVQTLKKLYNEGYKIHPSPYTLEIIQDKFVQKEFLKKNGIPVPEYKLVKDLES---DVREFGFPVVQKARKG-----GVFIIKNEKDLENAIK----GETYLEEFVE-IEKELAVMVARNEKGEIACYPVVEMY------DTVIAPARIEEKYSKIAREIATSVVEALEGVGIFGIEMFLTKQGEILVNEIAPRPHNSGHYTIEACVTSQFEQHIRAIMNLPLGSTELLIPAVMVNLLGE--EGYYGKPALIGLEEALAIEGLSLHFYGKKETRPYRKMGHFTVVDR |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3AX6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -182050 for 2768 contacts (-65.8/contact) +
2D Compatibility (PS) -35519 + (NN) -11242 + (LL) 1560
1D Compatibility (HY) -22800 + (ID) 5750
Total energy: -255801.0 ( -92.41 by residue)
QMean score : 0.424
|
|
|