Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIRGIGTDIVYIPRILRILQKYGKKFLNKIYTEQEIEISRKYNSQEMQAKYLAKRFAAKEAFVKALG-GFSHGIIMKDIEIYNDVRGKPHL----TVSKNFIFKD-HMIHLSLSDDGDCATAFVIICSSLP
5CMO Chain:B ((1-122))
MIYGIGTDIVSLKRIIRLNKKFGQAFAGRILTPEEL---LEFPQAGKPVNYLAKRFAAKEAFAKAVGTGIRGAVSFRNIGIGHDALGKPEFFYGPALSKWLEEQGISRVSLSMSDEEDTVLAFVVAEK---
General information:
TITO was launched using:
RESULT:
Template:
5CMO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68619 for 824 contacts (-83.3/contact) +
2D Compatibility (PS) -12519 + (NN) -4516 + (LL) 512
1D Compatibility (HY) -8800 + (ID) 2500
Total energy: -96442.0 ( -117.04 by residue)
QMean score : 0.508
(partial model without unconserved sides chains):
PDB file :
Tito_5CMO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5CMO-query.scw
PDB file :
Tito_Scwrl_5CMO.pdb
: