Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNFFQKLTGKFCNFFTFKGLFASDIAIDLGTANTLVYQKNQG-IVLDEPSVVARIKEK--GSYIPYAFGKKAKMMLGKTPGEIEAIRPLKDGVIADFKSAEEMLKYFIRSANTKLTVNKPNIIICVPSGSTPVERRAIQDAA-ESAGANEVFLIEEPMAAAIGAGLPV---TEPEGSMVVDIGGGTTEVAIISLGGIVYS--RSARVGGDIMDEAIRSYIRENHKLLIGETTAEKIKKSLGSASLPDENNKEWMMVKGR-----DLVSGMPKEMLLSEYQV---AESLIEP------VHQIISAIKTALESTPPELSSDIVDKGIVLSGGGGLLRNLGKVISETTKL---------PVHVADDPLCCVALGSGKVLENMDYFSHVLFKQD |
| 3DWL Chain:A ((3-408)) | -------------------SFNVPIIMDNGTGYSKLGYAGNDAPSYVFPTVIATR---TEDLD--FFIGNDALKK---ASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRC-EPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLR--------LKTAERIKEECCYVCPDIVKEFSRFDR---LKYAS---------IDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKN-IVLSGGSTLFKNFGNRLQRDLKRIVDERGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKAD |
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General information:
TITO was launched using:
| RESULT:
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Template: 3DWL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -108439 for 2484 contacts (-43.7/contact) +
2D Compatibility (PS) -32702 + (NN) -7587 + (LL) 2348
1D Compatibility (HY) -5200 + (ID) 2700
Total energy: -154280.0 ( -62.11 by residue)
QMean score : 0.417
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