Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLKEFEIEPLLKDKVPHQTKAVVAMSGGVDSSVAAVLLHRL-GYQVIGVTLQLYGADGNSNTRKKGVCCAGQDIYDAKRVAEGTGFP-HYILNYEEIFKKEVIESFAQT--YIQGKTPIPCIKCNQTVKFRDLLQVTRNLGADVLITGHYVRRLEKNGEVKLCRGIDKSKDQSYFLFATTKEQLKLLRFPLGGFY---KCNVRKLARYFSLPI-SEKPDSQDICFVSENY-SKTIAKLAP-------------Q-----------SIQKGKIVDVNGKVLGEHNGIV-NFTVGQRKGLGIA-YSEPLYVVRINTKNNEIVVGPVNALMQRKILVKELNWLEQPKKGMEVTVKLRSLHSGSLAKIYPAKEQNKAYVILNDDYFSISPGQACVAYKDEQVIGGGWICS |
| 1KOR Chain:A ((1-275)) | ------------------MKIVLAYSGGLDTSIILKWLKETYRAEVIAFTADIGQG---------------EEVEEAREKALRTGASKAIALDLKEEFVRDFVFPMMRAGAVYEGYYLLGTSIA-RPLIAKHLVRIAEEEGAEAIAHGATGKGND---QVRFELTA----------YALKP--DIKVIAPWREWSFQGRKEMIAYAEAHGIPVP---PYSMDANLLHISYEGGVLEDPWAEPPKGMFRMTQDPEEAPDAPEYVEVEFFEGDPVAVNGERLSPAALLQRLNEIGGRHGVGRVDIVENRFV---GMKSRGVYETPGGTILYHARRAVESLTLDREVLHQRDMLSPKYAELVYYGFWYAPEREALQAYFDHVARSVTGVARLKLYKGNVYVVGRKAPKS |
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General information:
TITO was launched using:
| RESULT:
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Template: 1KOR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -122803 for 1849 contacts (-66.4/contact) +
2D Compatibility (PS) -25067 + (NN) -7285 + (LL) 2556
1D Compatibility (HY) -5200 + (ID) 2350
Total energy: -160149.0 ( -86.61 by residue)
QMean score : 0.340
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