Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIKVGVIGCSGRMGKRILNELITNTQVEIAGAVARLGSKYIGSDIGSAVYHSSNLGIKVTSSISDVFESSDVVIDFTTKECMLACLKAAMKFKTPLVSGTTGIESI---NLKKYAAKIPILWSANMSVGVNVLLKLVKKAAEFLDNEYDVEIWEMHHNLKKDSPSGTAMEFGKAIANALKVDFQPYQ--HSHNSSNIREKGKIGFAVSRGGGVVGDHSVMFINSDERIELNHKAIDRTTFARGAVRAAIWLYENKRETPGLYSMQDVI
1DIH Chain:A ((4-268))
ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAG-AGKTGVTVQSSLDAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAADIAIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSREGHTGERVPGTIGFATVRAGDIVGEHTAMFADIGERLEITHKASSRMTFANGAVRSALWLSGK---ESGLFDMRDVL
General information:
TITO was launched using:
RESULT:
Template:
1DIH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -204110 for 2114 contacts (-96.6/contact) +
2D Compatibility (PS) -28320 + (NN) -14491 + (LL) 312
1D Compatibility (HY) -16000 + (ID) 5400
Total energy: -268009.0 ( -126.78 by residue)
QMean score : 0.496
(partial model without unconserved sides chains):
PDB file :
Tito_1DIH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DIH-query.scw
PDB file :
Tito_Scwrl_1DIH.pdb
: