Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------------------MFLVVTLPFMIFFNNEVGNYKVQFSYGCVYYATNEYVH-AGDKFYSNYFIDSHYGREINMYPQSELLAKGYVGNTLPILISLDKDLIK---------------------------------------------------------
1W4S Chain:A ((26-171))
MYHVGDYVYVEPAEANLQPHIVCIERLWE----DSAGE---KWLYGCWFYRPNETFHLATRKFLEKEVFKSDY---YNKVPVSKILG--------KCVVMFVKEYFKLCPENFRDEDVYVCESRYSAKTKSFKKIKLWTMPVSSVRFVPRDVPLPVVRVASVFA
General information:
TITO was launched using:
RESULT:
Template:
1W4S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35317 for 350 contacts (-100.9/contact) +
2D Compatibility (PS) -7470 + (NN) -1679 + (LL) 920
1D Compatibility (HY) -8000 + (ID) 950
Total energy: -52496.0 ( -149.99 by residue)
QMean score : 0.427
(partial model without unconserved sides chains):
PDB file :
Tito_1W4S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W4S-query.scw
PDB file :
Tito_Scwrl_1W4S.pdb
: